Re: [Freesurfer] How to compute area of subcortical structures

2015-11-12 Thread anirudh nihalani
uld > not be compared with surface area. > > Best, > Ruopeng > > On Nov 11, 2015, at 5:57 AM, anirudh nihalani > wrote: > > Hi Bruce, > >Sorry I forgot to attach the files mentioned in my last email. PFA the > files here. Thank you. > > Regards, >

Re: [Freesurfer] How to compute area of subcortical structures

2015-11-11 Thread anirudh nihalani
Hi Bruce, Thank you very much for your quick reply. Sorry I hadn't been able to reply faster as I was trying to figure out the below mentioned issue from two days. I have computed surface area of left-hippocampus using the commands mri_tessellate and mris_info. However I found that in freevi

[Freesurfer] How to compute area of subcortical structures

2015-11-09 Thread anirudh nihalani
Hi, I am trying to find how to compute the area of subcortical structures like amygdala, hippocampus, thalamus etc. I have checked stats/aseg.stats file but it doesn't have areas. I looked at mri_asegstats and mris_anatomicalstats commands. Using mris_anatomicalstats I am able to compute surfa