Re: [Freesurfer] Talairach_avi and eTIV, version 3.0.5 vs 4.0.5

Hi, for those interested: we have correlated FS's ICV estimates and estimates from a procedure developed by Anders Dale (a deformable template procedure, similar to the “Shrink Wrapping” procedure previously described by Dale and colleagues (Dale et al, 1999; Dale and Sereno, 1993)). Mean ICV from

Re: [Freesurfer] SPGR format

> you might try -it ge or -it gelx Thanks for the tips. We have tried both without luck, unfortunately. - Anders > > doug > > [EMAIL PROTECTED] wrote: > >>>Is it a dicom? Try >>> >>>mri_convert -i 12461.spgr -o 12461.mgz -it dicom >>> >>> >> >> >>It did not work either, unfortunately. >> >>- And

Re: [Freesurfer] SPGR format

> Is it a dicom? Try > > mri_convert -i 12461.spgr -o 12461.mgz -it dicom It did not work either, unfortunately. - Anders > > doug > > > > [EMAIL PROTECTED] wrote: > >>>What's your cmd line and what exactly is the problem? >>> >>>doug >>> >>> >> >>Hi, the commands and problems are pasted below.

Re: [Freesurfer] SPGR format

> What's your cmd line and what exactly is the problem? > > doug Hi, the commands and problems are pasted below. Thanks, Anders [EMAIL PROTECTED] folder]# cat $FREESURFER_HOME/build-stamp.txt freesurfer-Linux-centos4_x86_64-stable-pub-v4.0.1 [EMAIL PROTECTED] folder]# [EMAIL PROTECTED] raw]# m

[Freesurfer] SPGR format

Hi, we have problems converting scans obtained from a GE scanner with a T1-weighted 3-D spoiled gradient recalled (SPGR) sequence to anything freesurfer can read. Any tips? Thanks! - Anders ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu h

Re: [Freesurfer] multiple comparison

Hi Doug, we are eager to try the FSL randomise program on a FS data set we have. However, we have one (stupid, maybe) question: is the file design.con something that we make manually, or is it generated by some of the previous processes? If we are going to make it ourselves, how should it be? In o