Re: [Freesurfer] Labels for ventromedial prefrontal cortex (fwd)

2012-04-30 Thread Yiyu Chou
Thanks Rahul, This is much appreciated !! Also, is there a way to generate a binary mask for MOF ? Yi-Yu From: Rahul Desikan [rahuldesi...@gmail.com] Sent: Friday, April 27, 2012 2:22 PM To: Yiyu Chou; freesurfer@nmr.mgh.harvard.edu Cc: Bruce Fischl

[Freesurfer] Labels for ventromedial prefrontal cortex

2012-04-27 Thread Yiyu Chou
Dear FS users, I wonder if FS has labels for ventromedial prefrontal cortex. If not, is there an easy way to build it ? Thanks !! ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesur

Re: [Freesurfer] Talairach Transformation failed on Freesurfer 5.1

2011-06-14 Thread Yiyu Chou
16.3635120391846 Yi-Yu From: Nick Schmansky [ni...@nmr.mgh.harvard.edu] Sent: Tuesday, June 14, 2011 11:14 AM To: Bruce Fischl Cc: Yiyu Chou; freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Talairach Transformation failed on Freesurfer 5.1 a change in 5.1 over

[Freesurfer] Talairach Transformation failed on Freesurfer 5.1

2011-06-14 Thread Yiyu Chou
Dear Freesurfer users, I got different transformation matrices (shown below) when running ver 5.0 and ver 5.1 on the same subject - ver 5.0 was doing great but ver 5.1 failed: I would appreciate it if you can give me some advice. Yi-Yu Chou

[Freesurfer] Q: Talairach Transformation

2011-06-06 Thread Yiyu Chou
Dear Freesufer Users: I wonder if the Talairach transformation engine was modified on version 5.1 or not, since I got an error message that didn't happen with version 5.0 on the same subject when running recon-all: "ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED

[Freesurfer] Freesurfer 5.1 - ERROR: talairach_afd

2011-05-26 Thread Yiyu Chou
Dear Freesurfer Users, I tried the freesurfer 5.1 using command "recon-all -i xxx -s xxx -all" but I got an error message that didn't happen with version 5.0 on the same subject. "ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED***" Is it normal ? YY ___