patched binary copy but leaving the
other copies which linked statically unpatched)
- ...
Cheers,
On Sun, 21 Feb 2016, Yaroslav Halchenko wrote:
> On Sun, 21 Feb 2016, zkauf...@nmr.mgh.harvard.edu wrote:
> > This topic gets brought up occasionally and their are valid arguments
&g
On Sun, 21 Feb 2016, R Edgar wrote:
> On 21 February 2016 at 22:33, wrote:
> > Intolerable differences have not been found. They are always minor <%5 and
> > their source can come from several places. For example, different
> > compilers (or even different versions of the same compiler) can hav
On Sun, 21 Feb 2016, zkauf...@nmr.mgh.harvard.edu wrote:
> This topic gets brought up occasionally and their are valid arguments
> to both sides. One reason we have hesitated to use dynamic libs is the
> partly due to freesurfers long release cycle (all subjects that are
> part of a study need to
ATM
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/prebuilt/centos6_x86_64/centos6-x86_64-packages.tar.gz
has no versioned counterpart. Could you please provide some versioning
e.g. by actually having
centos6-x86_64-packages-0.0.20151104.tar.gz (based on its modification
date, 0.0. to
On Sat, 20 Feb 2016, Bruce Fischl wrote:
> hmmm, the only thing that worries me about dynamic linking is that it
> will add variability to the outputs. Zeke has spent endless amounts of time
> tracking down e.g. mac vs. pc differences in math libs and such. Won't
> dynamic linking just make th
Hi again,
While our "building from source" discussion is "hot" I wondered to ask
if there was an attempt or may be plans for to switch to using dynamic
linking (and collect functionality within a few internal
libraries) instead of static duplication of binary code across
binaries.
At some point M
On Fri, 19 Feb 2016, Yaroslav Halchenko wrote:
> On Fri, 19 Feb 2016, Z K wrote:
> > I still wasnt quite able to get the freeview GUI to build. But If you
> > change the "--disable-GUI-build" flag to "--without-qt" then you will
> > get all the t
On Fri, 19 Feb 2016, Z K wrote:
> Hello Yaroslav,
> Ive built freesurfer on Debian "Jessie" platform. It was just a matter
> of adding "libtool-bin" and "tcsh" to the list of packages that need to
> be installed.
I had tcsh but not libtool-bin installed in that chroot... heh
> Ive update th
tep by step
;)
--
Yaroslav O. Halchenko
Center for Open Neuroscience http://centerforopenneuroscience.org
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834 Fax: +1 (603) 646-1419
WWW: http://www.linkedin.com/in/yarik
From 1
On Thu, 18 Feb 2016, Z K wrote:
> I beleive the .travis.yml does work but it is still under active
> development.
is there a public clone of freesurfer on github?
> The Ubuntu instructions in the linux developers page have been tested on a
> clean install and should work
> (https://surfer.nmr.m
Hi Z K et al,
What would be the recommended/tested debian/ubuntu release to approach the
build with some guarantee of success? Is the .travis.yml "exercised" (failed
to quickly find a sign of it on travis-ci.org)?
I have tried on debian jessie to build stable5_branch-5622-gf3d0bcd of
the git/ann
lacking -lXmu
?
On Wed, 25 May 2011, Jordi Delgado wrote:
>../hipsstubs/libhipsstubs.a ../log/liblog.a ../xml2/libxml2.a
>../jpeg/libjpeg.a ../tiff/libtiff.a ../expat/libexpat.a -lGLU -lGL
>-L/usr/X11R6/lib -lX11 -lm ../glut/libglut.a -lz -lm -lcrypt -ldl
>-lpthread -lnetcdf
[Apologies for cross-posting]
Dear neuroscience researchers and IT staff
We invite you to participate in a survey on software usage and computing
environments in neuroscience research. It will take no more than five
minutes to fill it out. Immediately after sending your answers you will
get to se
Dear FreeSurfer Developers,
Thank you very much for providing source code exposed under CVS.
I wonder if there are any plans to either switch to another version
control system and/or provide source distribution in versioned
tarballs?
N.B. I was asking about vcs change, because rich history of f
mr.mgh.harvard.edu/facility/filedrop/showgroup/10224/1/2a5da2a125134fbdfc9e6850be1fcc09
>
> (expires in 30 days )
>
> Make sure PYTHONPATH has the directory which contains 'pymgh'. Found by
> typing,
--
Yaroslav Halchenko
Research Assistant, Psychology Department, Rutgers-N
;s because of nifti. Doug is out of town, but he's the one who
> will be able to tell you definitively.
>
> cheers,
> Bruce
--
Yaroslav Halchenko
Research Assistant, Psychology Department, Rutgers-Newark
Student Ph.D. @ CS Dept. NJIT
Office: (973) 353-5440x263 | FWD: 82823
ri.h in particular I don't see any limit on width/hight to be of
short (not int) type and int (4 bytes) should be good enough to store
full index. Is that due to some historical perspective? or am I just
completely missing smth?
Thanks in advance for the hints!
--
Yaroslav Halchenko
Resea
rsion of NX from nomachine wasn't stable enough for me -- I
was managing to crash it at least once in 2 days... VNC survives for up
to a month or so for me ;-)
On Fri, 25 Apr 2008, Paul Raines wrote:
> Another option to VNC is freenx.
>
> http://wiki.debian.org/freenx
>
--
Yaros
s regarding GLoverride.
> The real magic, as pointed out by Nick, is acutally the xf4vnc
> that can be downloaded from http://sourceforge.net/projects/xf4vnc .
> Tren
d
> > On Mon, 2007-01-15 at 23:27 -0500, Yaroslav Halchenko wrote:
> > Thank you very much for providing the s
ynamic library which does IO. Then it could be quite easy
to create python wrapper which would use it more or less directly...
> Nick
--
Yaroslav Halchenko
Research Assistant, Psychology Department, Rutgers-Newark
Student Ph.D. @ CS Dept. NJIT
Office: (973) 353-5440x263 | FWD: 82823 | Fax
st of the other stuff in there...
>
> Yaroslav Halchenko wrote:
>> Does anyone know any handy module to at least read in .mgh files from
>> Python? Or should I simply try mri_convert them into .minc and use
>> netcdf module within python?
>> Thanks in advance for the
Does anyone know any handy module to at least read in .mgh files from
Python? Or should I simply try mri_convert them into .minc and use
netcdf module within python?
Thanks in advance for the ideas!
--
Yaroslav Halchenko
Research Assistant, Psychology Department, Rutgers-Newark
Student Ph.D
for instances of /usr/pubsw/packages, which point to our
> installation of VNC.
> Nick
--
Yaroslav Halchenko
Research Assistant, Psychology Department, Rutgers-Newark
Student Ph.D. @ CS Dept. NJIT
Office: (973) 353-5440x263 | FWD: 82823 | Fax: (973) 353-1171
101 Warren Str, Smith Hal
ode : 148
| Minor code : 2
|
| Error text : 'GLXBadLargeRequest'
`---
Could you please advice on what VNC server solution you are using for
freesurfer
--
Yaroslav Halchenko
Research Assistant, Psychology Department, Rutgers-Newark
Student Ph.D. @ CS Dept. NJIT
Offi
24 matches
Mail list logo
