[Freesurfer] annot file to volume mask in the subject folders

Hi Freesurfers, What would be the best way to convert annot to volume mask (like nifty format) from fsaverage atlas? Thanks, ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The

Re: [Freesurfer] PALS B12

On 12/15/2015 03:19 PM, Woo, Jonghye wrote: I am trying to a brodmann mask using PALS B12 atlas in fsaverage. I used the following command to create the volume from annotation file. I have two questions associated with it. mri_aparc2aseg --s my_subject --annot PALS_B12_Br

[Freesurfer] PALS B12

I am trying to a brodmann mask using PALS B12 atlas in fsaverage. I used the following command to create the volume from annotation file. I have two questions associated with it. mri_aparc2aseg --s my_subject --annot PALS_B12_Brodmann --o PALS_B12_Brodmann_Mask.nii --annot-table lh_PALS_B12_tabl