Dear FreeSurfer experts,
we have processed a dataset crossectionally within version 4.5, and then ran
the longitudinal stream with v5.1. we are interested in the hippocampus
segmentations and now i'm wondering whether i should go back and run the whole
analysis from scratch with the newest vers
Dear Freesurfer specialists,
I'm currently working on a comparison between manual segmentations and
freesurfer segmentations of the hippocampus. Therefore i would be very
interested in the atlas used for subcortical segmentation. On the wiki i read
that the manually labeled brains used to build
Dear Freesurfer specialists,
we are currently working on a comparison paper between manual segmentations and
freesurfer segmentations of the hippocampus. In the paper by Jovicich and
colleagues (2009) they mention that they generated their own segmentation atlas
for the full brain freesurfer s
>
>(so run the hippo subfield segementation on the improved longitudinal
>results instead of the cross sectionals).
>Let me know how it goes.
>
>Best, Martin
>
>On Tue, 2011-08-30 at 10:44 +, Wenger, Elisabeth wrote:
>> Dear freesurfer specialists,
>>
>
Dear freesurfer specialists,
I am trying to run the very interesting hippocampus subfield segmentation on
subjects that have already undergone the standard volumetric pipeline AND the
longitudinal pipeline. I tried the command "recon-all –subjid
-hippo-subfields".
Unfortunately, i'm getting th
Dear Freesurfer experts,
I am currently planning a study in which I want to investigate changes in gray
matter due to training on structural MR images. I heard some rumors that
although FreeSurfer can of course process images with different voxel sizes, it
always somehow "transforms" the voxel
