[Freesurfer] Subcortical Projection

2015-02-20 Thread Venkataraman, Archana
Hi Freesurfer Experts, I'd like to project a subset of the subcortical structures from the aparc.a2009s+aseg annotation onto the closest medial surface vertices and write them into an annotation file. Is this possible? If so, what would be the easiest way to accomplish it? Thanks. - Archana _

Re: [Freesurfer] MNI Coordinates

2014-09-25 Thread Venkataraman, Archana
; > multiply them by this matrix > $FREESURFER_HOME/average/mni152.register.dat > > On 09/25/2014 11:00 AM, Venkataraman, Archana wrote: > > Hi Freesurfer experts, > > > > I have a set of RAS coordinates in the Freesurfer fsaverage space. What is > the ea

[Freesurfer] MNI Coordinates

2014-09-25 Thread Venkataraman, Archana
Hi Freesurfer experts, I have a set of RAS coordinates in the Freesurfer fsaverage space. What is the easiest way to transform them to MNI152 space? Thanks. - Archana ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.har

Re: [Freesurfer] Freeview crashes xterm

2014-03-03 Thread Venkataraman, Archana
My apologies, I meant the X server crashes, not the xterm. Thanks. - Archana > -Original Message- > From: Venkataraman, Archana > Sent: Monday, March 3, 2014 1:19 PM > To: 'freesurfer@nmr.mgh.harvard.edu' > Subject: Freeview crashes xterm > > Hi, &g

[Freesurfer] Freeview crashes xterm

2014-03-03 Thread Venkataraman, Archana
Hi, I am running freesurfer on a RedHat v6.5 machine (Santiago). I think the installation was successful and the paths are set correctly. However, my xterm crashes when I try to launch freeview. Strangely, the program works as expected when launched remotely via NX. Has anyone encountered this