Hi,
Writing this question helped me find my own mistake. I have been using
output_better.nii.gz instead of output_better.nii. Running gunzip
extraction before nii2mnc solves the problem.
Thanks alot,
Usman Ayub Sheikh
On Thu, Sep 7, 2017 at 4:32 PM, Usman Ayub wrote:
> Hi Freesurfer Peo
And if I try to use fslroi-cropped-structural-image with freesurfer, the
nii2mnc command would produce this error:
$ nii2mnc output_better.nii.gz
> ** ERROR: nifti_image_read(output_better.nii.gz): bad dim[0]
> Segmentation fault (core dumped)
>
I don't know how am I supposed to fix th
