[Freesurfer] Issue related to converting .nii.gz file to .mgz using FreeSurfer's mri_convert

2024-05-15 Thread Tsigaras, Thanos
External Email - Use Caution Hello FreeSurfer Developers, I am using FastSurfer for this processing, but the issue is related to FreeSurfer's mri_convert function. I wanted to perform some manual segmentation edits on the "aparc.DKTatlas+aseg.deep.mgz" output file of FastSurfer.

[Freesurfer] Issues with accuracy of pial and white matter surface reconstruction in infant_recon_all command

2024-03-19 Thread Tsigaras, Thanos
External Email - Use Caution Dear infantFS-team, We are a team of PhD students, who recently decided to use infantFS for the segmentation and surface extraction on our data. We used the infant_recon_all command for preprocessing T1w sMRI scans from the Baby Connectome Project d