Re: [Freesurfer] parallel recon-all using T1,T2 images

2023-04-27 Thread Toshiharu Kamishikiryo
External Email - Use Caution Thanks for pointing that out, sir. 2023年4月27日(木) 16:15 Toshiharu Kamishikiryo : > Hello Freesurfer experts > > I am trying to recon-all using T2 images as well to improve pial > surfaces. Does anyone know how to use GNU Parallel in bas

[Freesurfer] parallel recon-all using T1,T2 images

2023-04-27 Thread Toshiharu Kamishikiryo
External Email - Use Caution Hello Freesurfer experts I am trying to recon-all using T2 images as well to improve pial surfaces. Does anyone know how to use GNU Parallel in bash to run the following commands in parallel? recon-all -subject subjectname -i /path/to/T1w.nii -T2 /pat

Re: [Freesurfer] ACPC alignment and RF/B1 bias correction before processing

2023-04-24 Thread Toshiharu Kamishikiryo
External Email - Use Caution Wow! Dr. Glasser. Thank you very much for your reply. 2023年4月24日(月) 6:46 Toshiharu Kamishikiryo : > Hello Freesurfer experts > > Would it be more accurate to apply ACPC alignment and RF/B1 bias > correction to T1w.nii.gz before recon-al

[Freesurfer] ACPC alignment and RF/B1 bias correction before processing

2023-04-23 Thread Toshiharu Kamishikiryo
External Email - Use Caution Hello Freesurfer experts Would it be more accurate to apply ACPC alignment and RF/B1 bias correction to T1w.nii.gz before recon-all to improve pial estimation accuracy? Thanks in advance Regards Kamishikiryo Research Student _