Re: [Freesurfer] FreeSurfer in fmriprep

2024-08-01 Thread Tengwen Fan
o. It looks like they are registering the FS-conformed anatomical volume back to the native space, which would not make sense. Sorry, I'm going to have to send you back to the fmriprep folks. On 7/29/2024 6:00 PM, Tengwen Fan wrote: External Email - Use Caution Hi Dr. Greve, Thank

Re: [Freesurfer] FreeSurfer in fmriprep

2024-07-29 Thread Tengwen Fan
d the recon-all.log file in the scripts folder On 7/23/2024 2:14 PM, Tengwen Fan wrote: External Email - Use Caution Dear FreeSurfer Developers, I hope this email finds you well! I am using fMRIprep to do pre-processing. The fMRIprep combines methodology from AFNI, ANTs, Freesurfer, FSL, and

[Freesurfer] FreeSurfer in fmriprep

2024-07-23 Thread Tengwen Fan
External Email - Use Caution Dear FreeSurfer Developers, I hope this email finds you well! I am using fMRIprep to do pre-processing. The fMRIprep combines methodology from AFNI, ANTs, Freesurfer, FSL, and Mindboggle to do preprocessing. An error was reported while running the