Re: [Freesurfer] retinotopy and FsFast

f you don't have a occipital patch made. Thought that might be your trouble. Stephanie McMains On Nov 24, 2005, at 12:09 PM, Jane Aspell wrote: hi again I have been proceeding with the retinotopy analysis using FsFast, following the instructions at: https://surfer.nmr.mgh.harvard.

Re: [Freesurfer] Intstallation problems on new dev?

Are there other new scripts or features in the dev release other than the recon-all stuff? Thanks, Stephanie McMains On Sep 8, 2005, at 10:09 AM, Nick Schmansky wrote: A new set of Linux 'dev' distributions has been uploaded which contain the recon-all bug fix. That link

Re: [Freesurfer] occipital cuts

We find that it helps to make the calcarine cut go very far posterior, usually requiring you to rotate the brain by about 30 degrees so you can actually reach the occipital pole. Then for the cutting plane points we use the anterior point of the calcarine cut, the acsending limb of the cingulate s

[Freesurfer] mask to label

I was wondering if there was a script that allowed me to convert a mask back into a label. I was looking at mri_vol2roi, but it seems to want the input in bshort format. Thanks for any help, Stephanie McMains ___ Freesurfer mailing list Freesurfer

[Freesurfer] looking at blocked data on a patch in surf-sess

I am trying to look at data analyzed as a block design on a flat.occip.patch. I am trying to use surf-sess to do this, but I have found if I set the patch option in the command line then it automatically thinks I am doing retinotopy and tries to use the twocond-flat.tcl script, which is incorrect.