[Freesurfer] mri_cvs_register: how to read/import .m3z warp file

2017-01-30 Thread Stefano Zappalà
Dear FreeSurfer Developers, I am trying to visualize and modify the output warp field (in .m3z) of a mri_cv_registration call aimed at aligning a T1w scan to the MNI space. I was wondering how file format .m3z is organized, in order to read it with, for example, matlab. Or if there are simpler

Re: [Freesurfer] createMorph & applyMorph: unexpected results

2017-01-16 Thread Stefano Zappalà
ults Hi Stefano, If you have the final_CVSmorph_toSynthF.m3z file you can use mri_vol2vol dirctly to apply it to another volume. Look for examples in mri_cvs_register --help. We are moving away from using the tm3d file format. Lilla On Wed, 11 Jan 2017, Stefano Zappalà wrote: > > H