Re: [Freesurfer] thickness maps: FDR versus Monte Carlo - different results

2010-02-01 Thread Stefan Ehrlich
Thank you all for the very good and detailed advice. We reran our cluster-wise correction after lowering the initial p-value (the one which is applied to the T-maps) to 0.01 or 0.001. Interestingly we then get the very same blob like in the FDR controlled approach (supramarginal gyrus). However,

Re: [Freesurfer] "dummy variable" in mri-glmfit

2009-12-02 Thread Stefan Ehrlich
Hi Doug and Nick, thanks for your quick answer. I think that the assumption of linearity can often be made in genetics and in large GWAS studies the coding is done as suggested by Nick. However, Nick's solution does not suit this particular case since one of the homozygous groups has less than

[Freesurfer] mri_label2label --regmethod question

2009-09-28 Thread Stefan Ehrlich
Hi there, I copied fsaverage into my SUBJECTS_DIR, opened it with tksurfer, drew a custom label on the fsaverage surface and saved it under labels. I then used mri_label2label to map this new label to individual subjects with the --regmethod surface flag : mri_label2label --srclabel /.../subjec

[Freesurfer] Research position (PhD) in Cognitive and Developmental Neuroscience at the Dpt. of Child and Adolescent Psychiatry, RWTH University of Aachen/JARA-Brain Translational Brain Medicine

2009-05-04 Thread Stefan Ehrlich
Research position (PhD) in Cognitive and Developmental Neuroscience at the Dpt. of Child and Adolescent Psychiatry, RWTH University of Aachen/JARA-Brain Translational Brain Medicine The successful applicant will be conducting in research projects with a particular focus on the development of n