Re: [Freesurfer] aparc & wm underestimation

2024-03-16 Thread Stanica, Maria
tvol mrisps.pial.mgz And pass that to recon-all with the -expert option On 3/5/2024 7:10 PM, Stanica, Maria wrote: External Email - Use Caution Yes, the problem is that the white surface on the left side of the image is extending too far into subcortical gray matter. We did delete the con

Re: [Freesurfer] aparc & wm underestimation

2024-03-05 Thread Stanica, Maria
9 PM, Stanica, Maria wrote: External Email - Use Caution This is after the most recent round of edits for one of the subjects. Maria Stǎnicǎ, B.A. | Graduate Student Medical/Clinical Psychology Doctoral Program UAB |The University of Alabama at Birmingham mstan...@uab.edu<mailt

[Freesurfer] aparc & wm underestimation

2024-03-03 Thread Stanica, Maria
External Email - Use Caution Hello FS developers, I ran my subjects through skullstripping and recon-all. Everything processed correctly (and exited without errors), except 4 images which have an underestimation in coronal subcortical region. The underestimation is significant