2/22/2023 8:59 PM, Smith, Christine wrote:
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Hi Yujing,
Thank you for explaining that.
I believe that mri_surfcluster is the correct output, in that it is carrying
out a one-sided test of significance at 2 (Sig = -log(pvalue), i.e., p < 0.01).
For
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I think you can try to adjust these options to match freeview: --thmin <>,
--thmax <>, --thsign <>, --minarea <>, --no-adjust.
Best,
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Smith, Christine
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Hello,
I am getting a mismatch of clusters when we view cluster results in freeview
versus ask for a table of the significant clusters.
I am performing a GLM analysis on Freesurfer to analyze cortical thickness
(mri_glmfit). When viewing the signifi
