Hi Bruce,
From the processing that's been performed we're fairly certain that the
issue is only with the -long script. So I just wanted to verify with you if
I processed our many baseline subjects with version4 (cross-sectionally),
while the -long script is being bug-fixed, I could simply star
error messages!) and we'll take a look?
thanks,
Bruce
On Fri, 27 Jun 2008, Sky Raptentsetsang wrote:
This is a very strange and
amusing issue that is occurring with a
population of subjects that I ran previously on version 3.0.5 and am
now
rerunning on version 4.0.4. The subjects are fini
This is a very strange and amusing issue that is occurring with a
population of subjects that I ran previously on version 3.0.5 and am now
rerunning on version 4.0.4. The subjects are finishing recon-all with no
errors after substantially longer than usual, because the mri_segstats
script appears
ed would show a significant increase in avg. thickness in the TBI
subjects compared to the PTSD. Basically, is the color scale bar in
relation to the first variable in the scalar description (in this case
TBI) or the second. Is this assumption correct?
Thanks,
Sky Raptentsetsang
Staff Research Asso
, Bruce Fischl wrote:
> and what version are you running? The easiest thing to do would be
to
> cp aseg.auto.mgz aseg.auto_noCCseg.mgz
>
> then try again. I think Nick fixed this in the current version
> On
> Thu, 29 May 2008, Sky Raptentsetsang wrote:
>
> > Hi Bruce,
>
n Thu, 29 May 2008, Sky Raptentsetsang wrote:
Hi Bruce,
I have the following of the specified files in the ../mri dir:
aseg.auto.mgz
aseg.auto_CCseg.mgz
aseg.mgz
Sky
At 04:00 PM 5/29/2008, Bruce Fischl wrote:
can you see what aseg*.mgz volumes there
are in your mri dir?
On Thu, 29 May
Hi Bruce,
I have the following of the specified files in the ../mri dir:
aseg.auto.mgz
aseg.auto_CCseg.mgz
aseg.mgz
Sky
At 04:00 PM 5/29/2008, Bruce Fischl wrote:
can you see what aseg*.mgz
volumes there are in your mri dir?
On Thu, 29 May 2008, Sky Raptentsetsang wrote:
Hello,
I am re-running
any help!
Sky Raptentsetsang
Staff Research Associate
CIND, San Francisco VAMC
Department of Radiology, UCSF
4150 Clement St. Bldg. 13, 2nd Floor, Mail Stop 114M
San Francisco, CA 94121
Phone 415.221.4810 ext. 4186
Fax 415.386.3954
___
Freesurfer
Nick Schmansky wrote:
On Thu, 2008-04-17 at 15:20
-0700, Sky Raptentsetsang wrote:
> Hi Nick,
>
> Thanks for all the info.
> I'm fairly certain that both the subjects 005_S_0610X1a and
> 005_S_0610X2a have been run with FSv4.
the problem stems from:
1) using the -long flag, which s
08 0.00
At 06:05 PM 4/16/2008, Bruce Fischl wrote:
Hi Sky,
what are the first few lines of:
/cind/00/FSv4Test/Freesurfer/subjects/average/label/lh.cortex.label
is your partition full?
Bruce
On Wed, 16 Apr 2008, Sky Raptentsetsang
wrote:
Hello
label file in tksurfer? If not, then its
corrupted somehow, and would need to be recreated outside of
qdec.
Nick
On Wed, 2008-04-16 at 17:49 -0700, Sky Raptentsetsang wrote:
> Hello Freesurfers,
>
> I am having troubles analyzing some data in the qdec tool. I have
two
> groups of the same su
/2008, Bruce Fischl wrote:
Hi Sky,
what are the first few lines of:
/cind/00/FSv4Test/Freesurfer/subjects/average/label/lh.cortex.label
is your partition full?
Bruce
On Wed, 16 Apr 2008, Sky Raptentsetsang wrote:
Hello Freesurfers,
I am having troubles analyzing some data in the qdec tool. I hav
ects/qdec/lh.thickness.version/contrasts/Diff-v3-v4-Intercept-thickness.mat
Thanks in advance.
Sky Raptentsetsang
Staff Research Associate
CIND, San Francisco VAMC
Department of Radiology, UCSF
4150 Clement St. Bldg. 13, 2nd Floor, Mail Stop 114M
San Francisco, CA 94121
Phone 415.221.4810 ext.
assumptions, but I thought it the fastest way to detail my
question.
Thanks,
Sky
Sky Raptentsetsang
Staff Research Associate
CIND, San Francisco VAMC
Department of Radiology, UCSF
4150 Clement St. Bldg. 13, 2nd Floor, Mail Stop 114M
San Francisco, CA 94121
Phone 415.221.4810 ext. 4186
Fax
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