Re: [Freesurfer] Freesurfer Recon all {Disarmed}

2018-02-20 Thread Shim Hee Youn
=6.984000205993652 ms; Weighting=T1; Best Regards, Shim Hee Youn Research Assistant Multimodal Neuroimaging in Neuropsychiatric Disorders Laboratory | Center for Cognitive Neuroscience | Neuroscience and Behavioral Disorders Program | Duke-NUS Medical School, Singapore Address: 8 College Road, #06

Re: [Freesurfer] Freesurfer Recon all {Disarmed}

2018-02-19 Thread Shim Hee Youn
Hi Bruce, Thanks for your email. I am using Freesurfer version 6 and the command I used to run is this: qsub -m n -o o -e e -V recon-all -subjid ${Z}_${Image}_fs -i ${step1LocalDir}/$T1 -FLAIR ${step1LocalDir}/${FLAIR} -FLAIRpial -all Best Regards, Shim Hee Youn Research Assistant Multimodal