Re: [Freesurfer] Error when using preproc-sess -per-session in FS-5.3

2013-08-12 Thread Sepide Movaghati
...@nmr.mgh.harvard.edu] on behalf of Sepide Movaghati [sepide.movagh...@mail.mcgill.ca] Sent: Monday, August 12, 2013 11:31 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Error when using preproc-sess -per-session in FS-5.3 Hello, I am using freesurfer 5.3 and try to run: preproc-sess -s session1

[Freesurfer] Error when using preproc-sess -per-session in FS-5.3

2013-08-12 Thread Sepide Movaghati
Hello, I am using freesurfer 5.3 and try to run: preproc-sess -s session1 -surface self lhrh -fsd bold -mni305 -fwhm 5 -per-session it gives me an error: 1/1 session1 1/1 session1 003 lh - Mon Aug 12 11:21:09 EDT 2013 ERROR: could not determine file for /export01/data/sepid/subjec

[Freesurfer] error when using selxavg3-sess in retinotopy analysis

2013-08-07 Thread Sepide Movaghati
Hi, I followed the steps for doing the retinotopy analysis. At the end I made my analysis as follows: mkanalysis-sess -a Retinotopy_ZY -surface self lh -TR 2 -retinotopy 36 -paradigm rtopy.par -fsd bold -fwhm 5 and then execute selxavg3-sess: selxavg3-sess –a Retinotopy_ZY –s sessi