External Email - Use Caution
Hi,
I know this is not an error but just a comment. But may I know what this
means:
"*key nSliceGroups unrecognized, line 11, skipping"*
I tried to look for line 11 in matlab scripts but they are mainly commented
out.
Thank you,
Sara
_
Hi Doug,
I need your recommendations on two topics. I really appreciate your help.
1.) I have two runs of the same experiment, each for about 12 minutes.
These 2 runs are different only in the presentation order of the stimuli. I
also have one localizer session which first, I calculated my contra
Just one clarification, this is for first level analysis (individual
subjects).
Thanks
On Wed, Apr 11, 2018 at 9:54 AM, Sarah Cole wrote:
> Hi Doug,
>
> At the end of my FSFAST analysis, I would like to plot the Canonical HRF
> shape generated by FSFAST for my events. I have found
Hi Doug,
At the end of my FSFAST analysis, I would like to plot the Canonical HRF
shape generated by FSFAST for my events. I have found this thread:
https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2013-July/031902.html
but I am not sure if I understand this line:
"plot(X.runflac(1).flac.ev(
eve
wrote:
> That does not get computed. You can do it in matlab with something like
>
> f = MRIread('f.nii.gz');
>
> fmn = mean(f.vol,4);
>
> fmnrep = repmat(fmn,[1 1 1 size(f.vol,3)]);;
>
> s = f;
>
> s.vol = f.vol./fmnrep;
>
> MRIwrite(s,'percent
Please ignore my previous post. I was wrong on so many levels!
Thanks
S
On Fri, Mar 30, 2018 at 8:34 AM, Sarah Cole wrote:
> Hi Doug,
>
> Sure. I have attached an excel sheet.
> I have averaged the signal magnitude across 16 blocks of objects, and 16
> blocks of scenes, separat
picture? the default
> lag is TR/2
>
> On 3/29/18 2:30 PM, Sarah Cole wrote:
>
> Thanks, Doug.
>
> I added (-4s) delay and plotted the data but I got the same delay as no
> shift. Also I did (+4) delay and lost most of the activation.
>
> Do you have any recommendation
in mkanalysis-sess
>
> doug
>
>
> On 03/28/2018 05:35 PM, Sarah Cole wrote:
> > Hi Doug,
> >
> > I have a block design experiment. After analyzing the data and
> > plotting the response magnitude across the TRs, we see that there is a
> > systematic lag in
Hi Doug,
I have a block design experiment. After analyzing the data and plotting the
response magnitude across the TRs, we see that there is a systematic lag in
the response. For example, in a 16s block (TR=2s), at TR-1 and TR-2 the
response goes down and then starts rising from TR-3. This is cons
hanks,
Sarah
On Tue, Feb 27, 2018 at 11:40 AM, Hoopes, Andrew
wrote:
> Hi Sarah, I updated the wiki page. We actually just put up a standalone,
> dev freeview app today.
>
> best
> Andrew
>
>
> On February 27, 2018 at 11:38:57 AM, Sarah Cole (coleashle...@gmail.com)
> wrote:
Hi Doug/Zeke,
Could you please update the page for freeview update on Mac- if it is
available.
https://surfer.nmr.mgh.harvard.edu/fswiki/UpdateFreeview
Thanks,
S
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.
I apologize. I was wrong.
Thanks,
S
On Mon, Feb 26, 2018 at 5:16 PM, Sarah Cole wrote:
> It doesn't work on tksurfer. But it's ok.
>
> So Doug, is this the latest tutorial: https://surfer.nmr.mgh.
> harvard.edu/fswiki/FsTutorial/MultiModalFmriIndividual_freeview for
think it should still work
>
>
> On 02/23/2018 05:16 PM, Sarah Cole wrote:
> > Hi,
> >
> > I was wondering if this method is still applicable in version 6
> > https://surfer.nmr.mgh.harvard.edu/fswiki/CreatingROIs
> >
> >
> > I cannot seem
Hi,
I was wondering if this method is still applicable in version 6
https://surfer.nmr.mgh.harvard.edu/fswiki/CreatingROIs
I cannot seem to find any of the options for creating an ROI.
Thank you,
S
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harva
Great. Thank you very much.
On Tue, Feb 20, 2018 at 11:19 AM, Douglas N Greve wrote:
> I don't output a variance explained per se. You can get p-values
> (sig=-log10(p)) and partial correlation coefficient (pcc) for a given
> regressor or contrast
>
>
> On 02/20/2018 12:
Hi Doug,
I have used spmhrf 0 in my FS-FAST analysis. I was wondering if there is
any way to check the variance explained and fits on the model?
Thank you,
-S
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu
s included for backwards compatibility. What do you mean by % signal
> change? Do you want the raw waveform as a percent?
>
>
> On 02/15/2018 01:52 PM, Sarah Cole wrote:
> > Thank you, Doug.
> >
> > Sorry for not being clear. Could you please tell me what h.nii.gz and
&
N Greve wrote:
> It divides the contast (ces) by voxel-wise mean. I'm not sure I
> understand your quesstion about h and h-offset
>
>
> On 02/15/2018 01:04 PM, Sarah Cole wrote:
> > Hi,
> >
> > Could someone please let me know how to get the percent sign
Hi,
Could someone please let me know how to get the percent signal change for
raw signal intensity?
I think the cespct.nii.gz gives me the contrast as %. However, I am not
sure about dividing h.nii and h-offset.nii. What are they?
Thank you
___
Freesu
Hi experts,
I was wondering if there is any tutorial or example on FIR analysis. I
don't know where to start.
I need to look at the time course of some voxels. I have a localizer
session and the main experiment. I am intending to find the ROIs in the
localizer scans and then extract their time co
Dear Dr. Douge,
I am a little bit confused about creating function ROI in V1.
Basically, I have some localizers that for some ROIs I need to find
activated neurons in a specific contrast in native space and then create
that ROI and map it to my experimental scans and extract their voxel data.
I
Thank you so much.
On Fri, Feb 9, 2018 at 11:48 AM, Douglas Greve
wrote:
> It is already built into the HRF model. If you need to shift them more or
> less than what is in the model, that can be accommodated. If you use the
> -spmhrf option, then you will get the same HRF as is used in spm.
>
>
22 matches
Mail list logo
