Re: [Freesurfer] Z-stat - z.mgh

-boun...@nmr.mgh.harvard.edu on behalf of Douglas N Greve" wrote: You can use the version 6 mri_glmfit which you can get from here: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_glmfit On 06/16/2016 07:51 AM, Robby De Pauw wrote: > > Dear FreeSurfer use

[Freesurfer] Z-stat - z.mgh

-lion-stable-pub-v5.3.0 Thank you for your response, Greetings Robby Robby De Pauw, PT, MT, drs. T +32 09 332 12 19 | Email robby.dep...@ugent.be<mailto:robby.dep...@ugent.be> Ghent University | Rehabilitation Sciences and Physiotherapy Campus Heymans 3B3 (022) De Pintelaan 185 BE-9000 Ghent

[Freesurfer] Convert ascii to .mgh

; % This is to get the proper header information lfdr = load('lfdr.asc'); F.vol = fast_mat2vol(lfdr,F.volsize); MRIwrite(F,'lfdr.mgh'); On 6/15/16 4:45 AM, Robby De Pauw wrote: Dear FreeSurfer users, To address the problem of multiple comparison, I wanted to apply the localfdr-m

[Freesurfer] Convert ascii to .mgh

file into an “.mgh”-overlay file. Any idea how I could approach this conversion (from asci back to .mgh)? Many thanks, Greetings Robby Robby De Pauw, PT, MT, drs. T +32 09 332 12 19 | Email robby.dep...@ugent.be<mailto:robby.dep...@ugent.be> Ghent University | Rehabilitation Scienc

[Freesurfer] longitudinal data processing

command? Thank you Greeting Robby Robby De Pauw, drs. Ghent University Department of Physiotherapy and Rehabilitation Sciences 3B3 De Pintelaan 185 B-9000 Ghent robby.dep...@ugent.be ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https

Re: [Freesurfer] permission denied

? Cheers Robby Robby De Pauw, drs. Ghent University Department of Physiotherapy and Rehabilitation Sciences 3B3 De Pintelaan 185 B-9000 Ghent robby.dep...@ugent.be > On 31 Oct 2014, at 16:35, zkauf...@nmr.mgh.harvard.edu wrote: > > Yes, please try running as root and get back when

Re: [Freesurfer] Syntax Error: trac-all -bedp

to adjust the permission in my SUBJECTS_DIR with the recursive option -R (chmod a+rwx -R $SUBJECTS_DIR), but this doesn’t seem to fix the problem. Thanks for the already given advice, Regards, Robby Robby De Pauw, drs. Ghent University Department of Physiotherapy and Rehabilitation Sciences

[Freesurfer] Syntax Error: trac-all -bedp

Dear Anastasia, Barbara & FS-community, The preprocessing step of Tracula was succesfully completed. However when I try to do the next step: fitting the Ball & Stick model I get another error: mri@ge24c165:/media/mri/DATAPART11/ROBBY/FREESURFER$ trac-all -bedp -c dmrirc.info INFO: SUBJECTS

Re: [Freesurfer] tracula: bvec-error

Hi Anastasia and Barbara I updated Tracula and now everything is running fine. Thx, Robby Robby De Pauw, drs. Ghent University Department of Physiotherapy and Rehabilitation Sciences 3B3 De Pintelaan 185 B-9000 Ghent robby.dep...@ugent.be On 04 Sep 2014, at 22:01, Anastasia Yendiki

Re: [Freesurfer] tracula: bvec-error

Hi Barbara and FS-community, I tried everything you suggested, but unfortunately the same error still occurs. Have you found a solution yet? Thanks for your help Best regards, Robby Robby De Pauw, drs. Ghent University Department of Physiotherapy and Rehabilitation Sciences 3B3 De Pintelaan

Re: [Freesurfer] tracula: bvec-error

Dear Barbara, Unfortunately I haven’t found a solution yet. I’ll keep you up to date. Greetings, Robby Robby De Pauw, dra. Ghent University Department of Physiotherapy and Rehabilitation Sciences 3B3 De Pintelaan 185 B-9000 Ghent robby.dep...@ugent.be On 01 Sep 2014, at 12:22, Barbara

[Freesurfer] GLM: table with uncorrected clusters

regards Robby Robby De Pauw, dra. Ghent University Department of Physiotherapy and Rehabilitation Sciences 3B3 De Pintelaan 185 B-9000 Ghent robby.dep...@ugent.be ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https

[Freesurfer] seed-based functional connectivity: mkcontrast-sess

command I tried to use: mkcontrast-sess -rmprestim -analysis restingstate.sm05.lh -contrast restingstate.lh I’m sure I’m missing something here, but I can’t figure out what to do. Thanks for the already given support!! Best regards, Robby Robby De Pauw, dra. Ghent University Department of

[Freesurfer] ERROR: cannot find AFNI command 3dvolreg.afni

-per-run -fsd bold -stc upRegardsRobby preproc-GEZ_004_HACO-bold.log Description: Binary data Robby De Pauw, dra.Ghent UniversityDepartment of Physiotherapy and Rehabilitation Sciences3B3De Pintelaan 185B-9000 Ghentrobby.dep...@ugent.be ___ Freesurfer

Re: [Freesurfer] tracula: bvec-error

Hi Anastasia,I’m using this version of tracula.trac-all,v 1.22.2.12 2013/02/23 02:01:02 ayendiki ExpI’ve attached the log-file you requested. Robby De Pauw, dra.Ghent UniversityDepartment of Physiotherapy and Rehabilitation Sciences3B3De Pintelaan 185B-9000 Ghentrobby.dep...@ugent.be trac-all.log

Re: [Freesurfer] tracula: bvec-error

ng the "Badly placed ()'s." error at the very beginning of your trac-all output. And it would explain why it can't find the files. Hope this helps, a.y On Thu, 21 Aug 2014, Robby De Pauw wrote: Dear FreeSurfer, When I try to use TRACULA I keep getting the following error:

Re: [Freesurfer] GLM: Error Matric-Scale

ndows computer. Is that possible? Try reformatting it in linux or mac. doug On 08/20/2014 12:58 PM, Robby De Pauw wrote: > > > > > > > > Hi there FreeSurfer > > When trying the GLM-analysis I keep getting the following error. Could > you help me with

[Freesurfer] tracula: bvec-error

uw/Desktop/SUBJECTS_FS/T1/INP_080_LISA_V_1/dmri/bvecs: No such file or directoryDarwin ge24p176.ugent.be 13.3.0 Darwin Kernel Version 13.3.0: Tue Jun  3 21:27:35 PDT 2014; root:xnu-2422.110.17~1/RELEASE_X86_64 x86_64trac-preproc exited with ERRORS at Thu Aug 21 16:00:45 CEST 2014 Robby De Pauw,

[Freesurfer] GLM: Error Matric-Scale

--surf fsaverage lh --cortex --glmdir lh.whiplash.glmdir   2. The FSGD file (if using one)  3. And the design matrix aboveThank you in advance,Robby Robby De Pauw, dra.Ghent UniversityDepartment of Physiotherapy and Rehabilitation Sciences3B3De Pintelaan 185B-9000 Ghentrobby.dep...@ugent.be