Re: [Freesurfer] Subcortical Segmentation

2016-10-09 Thread Raghav Mehta
now both nifti and mgz image output looks similar with minor difference (see attached nifti_mgz.png) But there is still that question. How can I convert (256x256x256) to (256x256x268)?? It would be great if you can help me with that. Once again thanks for your help. Raghav Mehta MS by Research

Re: [Freesurfer] Subcortical Segmentation

2016-10-09 Thread Raghav Mehta
gards, Raghav Mehta MS by Research (ECE) Center for Visual Information Technology International Institute of Information Technology - Hyderabad ​researchweb.iiit.ac.in/~raghav.mehta​ +91 9712990393 On Sun, Oct 9, 2016 at 11:54 PM, Bruce Fischl wrote: > > Hi Raghav > > We don't

Re: [Freesurfer] Subcortical Segmentation

2016-10-09 Thread Raghav Mehta
you > can cut the run time down to 2-4 hours, so we would recommend just running > the whole recon-all pipeline > > cheers > Bruce > > > > On Sun, 9 Oct 2016, Raghav Mehta wrote: > > Hi, >> >> I am new to freesurfer. I would like to know the command

[Freesurfer] Fwd: Subcortical Segmentation

2016-10-09 Thread Raghav Mehta
con2 stage which can give me segmentation in less time. ​ Also, when I am using recon-all -all option, I am getting segmentation of all the volumes in MNI space wraped using non-linear registration. Is there any way I can get segmentation in original image space??​ Thank you for your help. Regards, Ra

[Freesurfer] Fwd: Subcortical Segmentation

2016-10-08 Thread Raghav Mehta
con2 stage which can give me segmentation in less time. Thank you for your help. Regards, Raghav Mehta MS by Research (ECE) Center for Visual Information Technology International Institute of Information Technology - Hyderabad +91 9712990393 ___ Freesurfer ma

[Freesurfer] Subcortical Segmentation

2016-10-08 Thread Raghav Mehta
con2 stage which can give me segmentation in less time. Thank you for your help. Regards, Raghav Mehta MS by Research (ECE) Center for Visual Information Technology International Institute of Information Technology - Hyderabad +91 9712990393 ___ Freesurfer ma