[Freesurfer] mri_extract_label scripting

2010-01-28 Thread Pruce, Benjamin
I have managed to use the mri_extract_label to pull individual ROI's from the wmparc.mgz file and it works perfectly for my need. I'm wondering if it is possible to script this command to create individual ROI images for all non-zero regions in one step? Essentially I would like to be able to

[Freesurfer] using MRI_label2volume, and Mri_convert

2010-01-26 Thread Pruce, Benjamin
Hello, I am learning how to use Freesurfer command utilities and I came upon an issue. I have run a subject T1 scan through the recon-all steps and now have my parcel maps. Can someone help direct me on how I can extract individual images for each ROI label in the wmparc.mgz file? I would l