o you mean it is based on a volumentric sphere? How did you create it?
On 10/8/2021 1:24 PM, Pedersen, Walker Scott wrote:
If I run without the mask, the output sig file looks normal. If I overlay the
surface ROI and the output sig file on the fsaverage, I can see that the
maximum absolute p
21 9:25 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] glmfit sig file all zeros
what happens if you run it without the mask?
On 9/29/2021 2:33 PM, Pedersen, Walker Scott wrote:
I just wanted to follow up on this - based on the output I sent previously,
they seem to have the sa
be getting good F.nii.gz files,
but bad sig.nii.gz files.
____
From: Pedersen, Walker Scott
Sent: Thursday, September 23, 2021 1:40 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] glmfit sig file all zeros
Here is what I get fo
I see that generating the hippocampal subfields in the longitudinal pipeline
has its own script (segmentHA_T1_long.sh), but am not seeing a corresponding
script or command to do the same for the hypothalamic subunits. Would simply
running mri_segment_hypothalamic_subunits on my subject_session
dimension of
/autofs/cluster/neuromod/NIFTI/OCD_N
M/derivatives/fsfast/rois/recall/lIFG_surf_rad10.nii.gz
you can check with mri_info
On 9/17/2021 8:32 PM, Pedersen, Walker Scott wrote:
Hi,
I am running glmfit on some functional data (using ces.nii.gz surface files as
input) using ROIs and the
Hi,
I am running glmfit on some functional data (using ces.nii.gz surface files as
input) using ROIs and the --mask argument, that I plan to later submit to
glmfit-sim for small volume correction. I have some rois that are subcortical
and some that are surfaces. For the glmfit run within the
