Re: [Freesurfer] Occipital flattening

ls -l *patch* output: -rw-rw-r-- 1 tstefancin analyses 723208 Oct 26 14:38 lh.occip.patch3d -rw-rw-r-- 1 tstefancin analyses 646376 Oct 27 09:32 lh.occip.patch.3d -rw-rw-r-- 1 tstefancin analyses 401704 Oct 26 14:25 lh.patch -rw-rw-r-- 1 tstefancin analyses 917832 Oct 26 14:40 rh.occip.patch3d sur

Re: [Freesurfer] Occipital Flattening

I managed to change the directory, but when I ran the mris_flatten command it still said the file could not be found. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information

[Freesurfer] RE : Occipital Flattening

When I run the command pwd it shows me as being in the home file, but I have repeatedly changed the directory to the subject's surf folder. Why is it not changing the directory? ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.m

Re: [Freesurfer] Occiptial flattening

Hi again, I ran the command you send and the output is as follows ls cannot access *patch* : no such file or directory ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The informati

Re: [Freesurfer] Occipital flattening

Hi Bruce, Here is the command line and the output. mris_flatten -1 -w 0 -distances 20 7 lh.occip.patch.3d lh.occip.patch.flat MRISread(lh.occip.patch.3d): could not open file No such file or directory mris_flatten: could not read surface file lh.occip.patch.3d No such file or directory __

Re: [Freesurfer] Occiptial flattening

Yes the lh.occip.patch.3d is in the surf folder for each subject. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to w

[Freesurfer] Occipital flattening

In response to my previous question, the command line I was using was mris_flatten -1 -w 0 -distances 20 7 lh.occip.patch.3d lh.occip.patch.flat When I run this, the terminal output reads : lh.occip.patch.3d no such file or directory. I followed all the steps to create the patch, and saved the

[Freesurfer] occiptal flattening

Hello, I have been trying to flatten patches (the occipital cortex) in order to create retinotopic maps. However, when I run mris_flatten, the command window says it cannot read the patch file I have created. I have followed the tutorial page and have included -1 in my command, and still nothing ap