Re: [Freesurfer] withdrawing from the mailing list.

2017-04-08 Thread Paolo
urfer, get a password reminder, or change your subscription options enter your subscription email address: "* Sincerely Paolo 2017-04-07 11:41 GMT+02:00 : > Dear Secretariat of Freesurfer mailing list > > I want to stop receiving emails from the Freesurfer mailing list. > Please tea

Re: [Freesurfer] Registration of both the brain and the "surf" files to the same template.

2017-04-03 Thread Paolo
> > For surfaces I think mris_transform should do the trick (and possibly > mri_surf2surf, but I defer to Doug on this) > > > Bruce > On Fri, 31 Mar 2017, Paolo wrote: > > Thank you for your answer. >> I don't want the transformation to distort my image. >> Is t

Re: [Freesurfer] Registration of both the brain and the "surf" files to the same template.

2017-03-31 Thread Paolo
alairach.lta I aim to do this an all subjects: will they be aligned between themselves after the process? Thanks 2017-03-31 15:59 GMT+02:00 Bruce Fischl : > Hi Paolo > > if a linear transform is sufficient for your purposes you could just use > the talairach.lta in the subjects/

[Freesurfer] Registration of both the brain and the "surf" files to the same template.

2017-03-31 Thread Paolo
nnot find a "surface" template that corresponds to the "T1" template. *Ideally I would like to use the same .lta transformation BOTH for the T1 image and the surface*. As I understand (?) they have a different mesh-transformation matrix. Best regards, Paolo __

[Freesurfer] Conversion of .mgz volumes to trackvis space

2012-01-10 Thread paolo
coordinate tutorial, but i couldnt figure out what's the right way to convert a freesurfer mgz into trackvis coordinate space.. does anyone have a clue? thanks, Paolo ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvar

Re: [Freesurfer] MNI152 template regions

2011-11-07 Thread paolo
use this one (and its segmentation) instead of the fsaverage as an illustrative atlas in freesurfer space? Paolo On Mon, 7 Nov 2011 11:41:46 -0500 (EST) Bruce Fischl wrote: > Hi Paolo, > > Are you showing individual subject data in the MNI space, or group > average data? In gen

Re: [Freesurfer] MNI152 template regions

2011-11-07 Thread Paolo
ow long, i always stopped it before it finished) Paolo On 07-Nov-11 16:03, Thomas Yeo wrote: > I am probably wrong, but doesn't the volumetric part of fsaverage > correspond to MNI305 space rather than MNI152 space? > > --Thomas > > On Mon, Nov 7, 2011 at 9:00 AM, Bruce Fis

Re: [Freesurfer] MNI152 template regions

2011-11-07 Thread Paolo
documentation :) best, Paolo On 05-Nov-11 00:57, Paolo wrote: > Hello > > I am a new user of freesurfer. > I was wondering whether the brain regions for the MNI152 dataset are > available anywhere (i mean the template brain regions for the default > MNI152 template). > > > I h

[Freesurfer] MNI152 template regions

2011-11-04 Thread Paolo
.trk format. I was wondering: to bring them back into the template MNI152 space, is it sufficient to apply the talairach.xfm transformation matrix to the vertex data, or do i also need to use the m3z files (which look like a nonlinear deformation field)? thanks in advance! Paolo