Re: [Freesurfer] Patch x y z

If I have vertices for making a new patch, is there any command line tool for this? Hiroyuki -Original Message- From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl Sent: 03 October 2013 16:01 To: Oya, Hiroyuki Cc: freesur

[Freesurfer] Different freesurfer version

Hello Is it fine to process the anatomical data in v4.5 and analyze the results in v5.1? Thanks, Hiroyuki Notice: This UI Health Care e-mail (including attachments) is covered by the Electronic Communications Privacy Act, 18 U.S.C. 2510-2521, is confidential an

[Freesurfer] freeview RAS

Dear Sir, When I view a brain volume (e.x., orig.mgz) with freeview and tkmedit, RAS coordinate differs. Why? Thank you. Hiroyuki Notice: This UI Health Care e-mail (including attachments) is covered by the Electronic Communications Privacy Act, 18 U.S.C. 251

[Freesurfer] -cm switch error

Hello When I run recon-all with -cm switch, that generates error as follows: /* mri passed volume size is different from the one used to create M3D data ERROR: mri_ca_register with non-zero status 0 */ Without -cm switch, recon-all completes all processing without error. Any help would be appre

Re: [Freesurfer] selxavg3-sess error

I have not set path for afni. After setting the correct path, that runs fine. From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Oya, Hiroyuki (UI Health Care) Sent: 30 March 2012 07:53 To: freesurfer@nmr.mgh.harvard.edu Subject

[Freesurfer] selxavg3-sess error

Hi I got an error while running selxavg3-sess, "cannot find AFNI command 3dvolreg".(In ubuntu v11.). Any help would be appreciated. Hiroyuki Notice: This UI Health Care e-mail (including attachments) is covered by the Electronic Communications Privacy Act, 1

[Freesurfer] surface normals

Dear Sir, Can the surface normals be loaded in matlab? Is there a code for that and what variable should I look at in surf dir? Thank you. HIroyuki Notice: This UI Health Care e-mail (including attachments) is covered by the Electronic Communications Privacy A

[Freesurfer] Bad vertex in mris_flatten

Dear sir, Mris_flatten could not be completed due to the fact that only one bad vertex was found in the patch. Is there any quick way to correct the vertex? Thank you. Hiroyuki Notice: This UI Health Care e-mail (including attachments) is covered by the Elec

[Freesurfer] mri_ca_register error

Hello , I am running recon-all with -cm switch and getting following error. Is there any workaround? Without -cm switch , recon-all completes all the processing just fine. Thank you. Hiroyuki mri_ca_register -invert-and-save transforms/talairach.m3z mri passed volume size is different fro

[Freesurfer] find corresponding coordinates of verteces

Dear all, Is it possible to find the coordinates (ras and MNI) of every vertex points on a surface in matlab? Thank you. Hiroyuki Notice: This UI Health Care e-mail (including attachments) is covered by the Electronic Communications Privacy Act, 18 U.S.C. 25

[Freesurfer] surfsace of specific broadman's area

Dear all, I like to create a surface rendering restricted to some area (selected from aparc.annot.a2009s.ctab files)? Any suggestion would be appreciated. Best, Hiroyuki Notice: This UI Health Care e-mail (including attachments) is covered by the Electronic Co

[Freesurfer] read data mri_vol2surf

Hello Is it possible to load the outputs of mri_vol2surf with matlab? Thank you. Hiroyuki ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-m