[Freesurfer] Hippocampal mask from the subfields masks

2019-08-21 Thread Ole Johan Evjenth Sørhaug
the subfields module. Would the correct way to obtain this be by using the command mri_mergelabels on the subfield segmentations, then use mri_label2vol to create an mgz volume of the whole hippocampus? Regards Ole Johan Evjenth Sørhaug ___ Freesurfer

[Freesurfer] Freesurfer v6.0: Using FLAIR for hippocampal subfields

2018-08-20 Thread Ole Johan Evjenth Sørhaug
External Email - Use Caution Dear freesurfer experts, I'm interested in doing subfield segmentations of the hippocampus in version 6.0. What I am specifically interested in, is that if I can expect better segmentations if I use a 1mm isotropic FLAIR series in addition to the 1mm i