Re: [Freesurfer] Issues with segmentHA_T1.sh command

2019-10-10 Thread Olamide Abiose
rfer%5C%5D+FS6.0%5C-dev+%5C%28Jun27%2C+2018%5C%29+Hippocampal+subfield+Matlab+runtime+Java+error%22&o=newest&f=1 Can you please double check this is not your case? Cheers, /E Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesi

Re: [Freesurfer] Issues with segmentHA_T1.sh command

2019-10-10 Thread Olamide Abiose
" "NR" 0 "$2" "$1}' >> $stats end # All done! rm -f $IsRunningFile echo " " echo "All done!" echo " " echo "If you have used results from this software for a publication, please cite:" echo " " echo

Re: [Freesurfer] Issues with segmentHA_T1.sh command

2019-10-10 Thread Olamide Abiose
nd the .sh script? Best regards, Rosalia On Thu, Oct 10, 2019 at 8:29 PM Olamide Abiose mailto:oabi...@stanford.edu>> wrote: External Email - Use Caution Hello, I'm having great difficulty running the segmentHA_T1.sh command. I'm using the latest development version of Free

[Freesurfer] Issues with segmentHA_T1.sh command

2019-10-10 Thread Olamide Abiose
External Email - Use Caution Hello, I'm having great difficulty running the segmentHA_T1.sh command. I'm using the latest development version of Freesurfer and have downloaded Matlab R2014b. I get the following message when I try to run the command. Any advice/suggestions you c

Re: [Freesurfer] mri_glmfit flags not working

2019-03-25 Thread Olamide Abiose
is a table, even if the table has data derived from the surface) On 3/23/19 3:39 PM, Olamide Abiose wrote: External Email - Use Caution Hello, I am struggling to run mri_glmfit because various flags seem to be going unrecognized. This is my command: mri_glmfit —-table V1_lh_stats.txt

[Freesurfer] mri_glmfit flags not working

2019-03-23 Thread Olamide Abiose
External Email - Use Caution Hello, I am struggling to run mri_glmfit because various flags seem to be going unrecognized. This is my command: mri_glmfit —-table V1_lh_stats.txt —-fsgd glm/gender_age.fsgd dods —-C lh-Avg-thickness-age-Cor.mtx —-surf fsaverage lh —-cortex --