Re: [Freesurfer] Third party dependencies directory not found when building from source

2018-11-04 Thread Nakamura Kazuhiro
External Email - Use Caution Hello Christian, I have not checked 'make check' procedure, 'recon-all' with my compiled binary was finished without error and segmentation results looks nice. It may be OK for my environment. Using '-use-gpu' and '-openmp 8' flag, the time of 'reco

Re: [Freesurfer] Third party dependencies directory not found when building from source

2018-11-01 Thread Nakamura Kazuhiro
External Email - Use Caution Thank you for information of build parameter at CentOS6 packages archive. I also remember. Ubuntu 18.04 Default gcc/g++/gfortran compiler is now version 7.3.0-27. Therefore, at the compilation of freesurfer in Ubuntu 18.04, I have installed gfortran-

Re: [Freesurfer] Third party dependencies directory not found when building from source

2018-11-01 Thread Nakamura Kazuhiro
External Email - Use Caution Hi, I'm Kazuhiro. I also met trouble for compilation of freesurfer stable6 repository under my Ubuntu 18.04 LTS machine. Even the binary package of freesurfer6.0(freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz) can work under Ubuntu 18.04, o