[Freesurfer] hypothalamic nuclei question

yers/merge.py", line 519, in build raise ValueError(err_msg) ValueError: A `Concatenate` layer requires inputs with matching shapes except for the concat axis. Got inputs shapes: [(None, 176, 184, 176, 24), (None, 48, 184, 176, 480)] -- Niels Janssen Brain Imaging Lab

[Freesurfer] mri_vol2surf projections for subcortical structures

?). So I guess my question is whether mri_vol2surf works for these kinds of surfaces or whether some other approach should be used. Thanks! Niels -- Niels Janssen Brain Imaging Laboratory Institute of Biomedical Technologies Institute of Neurosciences University of La Laguna Tenerife, Spain https

[Freesurfer] make_average_subject error

x86_64 x86_64 GNU/Linux recon-all -s avgsub3 exited with ERRORS at mié jul 31 12:05:20 WEST 2019 -- Niels Janssen Brain Imaging Laboratory Institute of Biomedical Technologies Institute of Neurosciences University of La Laguna Tenerife, Spain https://sites.google.com/view/nielsjanssen

[Freesurfer] brainstem-structures different versions?

External Email - Use Caution Hi I see on the website of brainstem substructures that the '-brainstem-structures' option in freesurfer 6.0 stable release produces brainstem segmentations that are labeled v10 whereas the script 'segmentBS.sh' available in beta versions of freesurfer

[Freesurfer] hippocampal subfields downsampling question

ely, but I run into problems with subfield overlap because of the down sampling. I am wondering how to best deal with this issue, and from seeing non-overlapping subfields at both 0.33 and 1 mm I am thinking there must be someway to deal with this issue. -- Niels Janssen Brain Imaging Laboratory

Re: [Freesurfer] Ubuntu 16.04 solution?

. On Thu, Oct 20, 2016 at 4:57 PM, NIELS JANSSEN . wrote: > Hi Burkhard, > > Thanks for the message but this does not solve my problem. I untarred as > root in /usr/local, and as myself in /home. I also requested a new license > file (which appears the same btw), and it does not

Re: [Freesurfer] Ubuntu 16.04 solution?

witz, phone/fax: +49(3425)8875-2526/-2511 mail: maess > 'at' > cbs.mpg.de, http://www.cbs.mpg.de -- Niels Janssen Cognitive Neuroscience Laboratory Institute of Biomedical Technologies Center for Biomedical Research of the Canary Islands Univers

[Freesurfer] Ubuntu 16.04 solution?

les, except the license.txt which is root. Is this normal? Can I install freesurfer on my machine or should I revert to Ubuntu 14.04? Thank you. -- Niels Janssen Cognitive Neuroscience Laboratory Institute of Biomedical Technologies Center for Biomedical Research of the Canary Islands Universi