Re: [Freesurfer] bedpostx error inside trac-all

2022-03-31 Thread Mirro, Amy
...@nmr.mgh.harvard.edu on behalf of Mirro, Amy Sent: Wednesday, March 23, 2022 11:17 AM To: Freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] bedpostx error inside trac-all External Email - Use Caution Thanks so much for the quick response! Mimicking the behavior of a local run was my goal

Re: [Freesurfer] bedpostx error inside trac-all

2022-03-23 Thread Mirro, Amy
cluster. If you run trac-all with --jobs , it will save a text file with the commands that would've been submitted as jobs, instead of actually trying to submit them. Then you can submit them to a cluster yourself, using the syntax that's specific to your cluster. Anastasia. _

[Freesurfer] bedpostx error inside trac-all

2022-03-23 Thread Mirro, Amy
External Email - Use Caution Hello, I am trying to run trac-all -bedp and I am running into the following error: /opt/freesurfer/bin/bedpostx_mgh: 128: /opt/freesurfer/bin/bedpostx_mgh: Syntax error: "(" unexpected Others have encountered this error previously, and you had adv

[Freesurfer] trac-all -prep with intrareg = 2

2022-02-08 Thread Mirro, Amy
External Email - Use Caution Hello freesurfer devs, Thank you so much for all of your work on Tracula! I have been following this conversation (https://secure-web.cisco.com/1Ykw2-j5trx6ExR25illKidIACAuQbQ8aKBMO_GQNJvBetczSCKd1Qag-D73npLMv-T9LQAxWCim4zQwoc6bHCXKZVS5Jd0fTRVxpO4UV