Re: [Freesurfer] recon-all for macaque brain

2020-06-22 Thread Minqing Jiang
result, either with error or very bad segmentation. We are using TI 1100ms, TR3000/TE3.29 and FOV 128*128. Is there any way to segment young monkeys better? Thanks again. bests, Minqing Hi Minqing Jiang, Getting a macaque brain through Freesurfer requires a bit of manual tinkering. We have a

[Freesurfer] recon-all for macaque brain

2020-06-18 Thread Minqing Jiang
External Email - Use Caution Hi there, I'm running freesurfer to analyze macaque brain. Since the monkey brain is much smaller than human brain. We use 0.5*05* 05mm to scan the monkey brain. Is there anyway I can avoid downsampling the scan resolution to 1*1*1mm by recon-all?