Dear Freesurfers
The command:
mri_convert orig.mgz conv.mgz --conform
generates a conform volume but the intensity values are rounded to the next
integer.
Do you know how to avoid this?
Best
Cristiano
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Hi everybody,
a very happy new year, with the hope 2011 will bring us near to our goals.
I have a very simple question about surfaces in freesurfer. As i posted
previously, i am trying to match white matter surface RAS coordinates with the
corresponding anatomical volume.
My attempt is to save an
volume - surface shift in tkmedit
>
> Where did you get the vox2ras matrix that save_mgh takes? And what
> space are the surface fiords in? There is extensive documentation on
> our wiki fir the various coordinate systems we use
> Cheers
> Bruce
>
>
>
> On Dec 21, 2
Dear all
I would like to write an MRI anatomical volume and a surface in freesurfer
format.
The surface is correspondent to the white matter tessellation, while the volume
represents T1 anatomical slices, both obtained from softwares external to
FreeSurfer.
Using the two functions save_mgh.m an
Dear all
I am using the tkmedit GUI to add/erase pixel in a slice-wise fashion in order
to subsequently apply a tessellation on the white matter.
I launch the command
cd subject/mri
tkmedit -f brain.mgz -aux wm.mgz
from linux shell (64bit CentOS), where brain.mgz is the anatomical MRI and wm
is
