Re: [Freesurfer] TRACULA preprocessing error, FreeSurfer 5.2.0

2014-05-16 Thread McGinnity, Colm
sed is bvecs. The eddy current correction step > registers each DWI to the first b=0 image, and the same transformation is > applied to the corresponding gradient vector. This is a standard procedure > when doing eddy current correction by registration. > > Hope this helps, > a.y

Re: [Freesurfer] TRACULA preprocessing error, FreeSurfer 5.2.0

2014-05-16 Thread McGinnity, Colm
ease clarify which is used, and if these differences can be ignored? Thanks and best wishes, Colm. -Original Message- From: Anastasia Yendiki [mailto:ayend...@nmr.mgh.harvard.edu] Sent: 11 March 2014 00:39 To: McGinnity, Colm Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] TRACULA pr

Re: [Freesurfer] TRACULA preprocessing error, FreeSurfer 5.2.0

2014-03-18 Thread McGinnity, Colm
nnity King's College London -Original Message- From: Anastasia Yendiki [mailto:ayend...@nmr.mgh.harvard.edu] Sent: 11 March 2014 00:39 To: McGinnity, Colm Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] TRACULA preprocessing error, FreeSurfer 5.2.0 Hi Colm - Not

[Freesurfer] TRACULA preprocessing error, FreeSurfer 5.2.0

2014-03-10 Thread McGinnity, Colm
Dear Experts, I am very new to TRACULA, I apologise for what is probably a silly question. I've got the following error on running trac-all -prep (FreeSurfer 5.2.0): awk: cmd. line:1: fatal: cannot open file `0' for reading (No such file or directory) mri_concat --i /home/k1193186/FreeSurfer/T