Re: [Freesurfer] Mri Convert Bruker MGRE files dicom to nii error

2022-04-28 Thread Mateo Jean
S_LOAD_DWI FS_LOAD_DWI: Undefined variable. >setenv FS_LOAD_DWI 0 >echo $FS_LOAD_DWI 0 >mri_convert … I’m hoping it will solve your problem by setting the environment variable. Best, Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Mateo Jean Sent:

Re: [Freesurfer] Mri Convert Bruker MGRE files dicom to nii error

2022-04-27 Thread Mateo Jean
variable, you do ‘export FS_LOAD_DWI = 0’ in bash, and ‘setenv FS_LOAD_DWI 0’ in csh. Can you give it a try? Thanks. Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Mateo Jean Sent: Tuesday, April 26, 2022 7:51 AM To: freesurfer Subject: [Freesurfer] Mri

[Freesurfer] Mri Convert Bruker MGRE files dicom to nii error

2022-04-26 Thread Mateo Jean
External Email - Use Caution Hello FreeSurfer Developers I hope i don't spam, if anyone has a clue... I need to convert 512 dicom files from Bruker into .nii . I firstly add .dcm to my Bruker multi gradient echo phase files then enter the following command : mri_convert MRIm

[Freesurfer] Mri Convert Brucker MGRE files dicom to nii error

2022-04-06 Thread Mateo Jean
External Email - Use Caution Hello FreeSurfer Developers I need to convert 512 dicom files from Bruker into .nii . I firstly add .dcm to my Bruker multi gradient echo phase files then enter the following command : mri_convert MRIm001.dcm phaseMGE.nii Here is the first messag