[Freesurfer] Grey matter misclassified as white matter

2017-05-18 Thread Maryam Kouchakidivkolaei
Dear experts, I am using freesurfer V5.3. I am trying to fix some error in freesurfer outputs. The issue is that grey matter misclassified as white matter in temporal lobe (lh). I tried to edit Wm.mgz and re-run with -autorecon2-wm, but it did not work. Looking at the brainmask.mgz, white matter

[Freesurfer] Converting RAW data to ANALYZE format

2016-09-07 Thread Maryam Kouchakidivkolaei
Dear experts: I have bunch of files in RAW format, how can I convert them to NIFTI or ANALYZE format? Any help would be appreciated. Thanks, Maryam ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listi