[Freesurfer] Hind's V1 Error for Freesurfer 6

Dear Freesurfer group, We are interested in processing the Hind's V1 areas in addition to the Broadman areas. I am using a developmental verison of Freesurfer 6 from 1/18/2019 on Centos 6. I copied the V1_average into my $SUBJECTS_DIR folder and ran the following command on one subject (JS45

Re: [Freesurfer] Flipped left to right hemisphere subjects

2018 14:44:00 -0700<https://www.mail-archive.com/search?l=freesurfer@nmr.mgh.harvard.edu&q=date:20180820>? Is the volume actually left-right reversed? From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Lutz,Olivia (BIDMC - Psychiatry) Sent: Mon

[Freesurfer] Flipped left to right hemisphere subjects

Hi Doug, Yes the brainmask volume is left-right reversed as well. Thanks! Olivia This message is intended for the use of the person(s) to whom it may be addressed. It may contain information that is privileged, confidential, or otherwise protected from disc

Re: [Freesurfer] Flipped left to right hemisphere subjects

Hi Doug and Bruce, thank you for the quick reply. As a follow-up question, we've edited our brainmasks for a dataset and want to flip some subjects left to right. I found instructions to flip the scans, however they are for the nu.mgz file (https://surfer.nmr.mgh.harvard.edu/fswiki/LeftRightRe

[Freesurfer] Flipped left to right hemisphere subjects

Dear Freesurfer group, We have some scans that have been processed using Freesurfer 5.1 and the measures have already been extracted from the DKT atlas. We've realized that some of the scans have been flipped left to right before proceeding through recon-all. Assuming we cannot reprocess these