Re: [Freesurfer] Freeview - Load custom overlay from terminal

2020-06-21 Thread Loucao, Ricardo
at you built? You can check freeview?s build time from About menu. Best, Ruopeng Date: Thu, 18 Jun 2020 08:15:44 + From: "Loucao, Ricardo" mailto:r.lou...@fz-juelich.de>> Subject: [Freesurfer] Freeview - Load custom overlay from terminal To: "freesurfer@nmr.mgh.harvard.edu

[Freesurfer] Freeview - Load custom overlay from terminal

2020-06-18 Thread Loucao, Ricardo
External Email - Use Caution Dear FS experts, I’m trying to load a surface with a custom overlay directly from the terminal using the sub-option “overlay_custom” but it returns “Unrecognized sub-option flag ‘overlay_custom’”. I checked the source code on GitHub and found the fla

[Freesurfer] Segmentation fault mri_em_register

2019-12-13 Thread Loucao, Ricardo
External Email - Use Caution Dear Freesurfer experts, I’m trying to run recon-all on "T1-like” data (it is actually a quantitative MRI map with a contrast very similar to T1). I managed to put it through recon-all’s autorecon1 stage without any major tricks or modifications (wat

Re: [Freesurfer] CAT12 surfaces on tkregister2 and Freeview

2019-02-25 Thread Loucao, Ricardo
2019, at 10:09, Loucao, Ricardo mailto:r.lou...@fz-juelich.de>> wrote: Dear Douglas, I’m sorry for not being explicit. What I meant to say was that the overlay was still “offset" from the actual volume. See attachment. It is the side view of the CAT 3D surface in grey and in red wha

Re: [Freesurfer] CAT12 surfaces on tkregister2 and Freeview

2019-02-25 Thread Loucao, Ricardo
ormal mri_vol2surf. Many thanks for the help! Ricardo [cid:F2E46BE8-7CAA-404B-8028-511B84634F45@ime.kfa-juelich.de.] On 22. Feb 2019, at 14:58, Loucao, Ricardo mailto:r.lou...@fz-juelich.de>> wrote: Thanks for the reply! I tried the --vol-geom orig.mgz option but to no avail. Smal

Re: [Freesurfer] CAT12 surfaces on tkregister2 and Freeview

2019-02-22 Thread Loucao, Ricardo
External Email - Use Caution Thanks for the reply! I tried the --vol-geom orig.mgz option but to no avail. Small update: I inspected the metadata on the surface files using mris_info and discovered that the ctr property was different between the CAT generated surface and the pia