Re: [Freesurfer] White matter and white matter lesions

2014-10-05 Thread Leise Borg
...@nmr.mgh.harvard.edu] Sent: 4. oktober 2014 18:22 To: Leise Borg; freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] White matter and white matter lesions On 10/4/14 12:35 AM, Leise Borg wrote: > So - just to be sure - if I take labels 2, 7, 41, and 46 from aseg.mgz, then > I have ALL white matter

Re: [Freesurfer] White matter and white matter lesions

2014-10-03 Thread Leise Borg
file for this too? -Leise -Original Message- From: Douglas N Greve [mailto:gr...@nmr.mgh.harvard.edu] Sent: 3. oktober 2014 18:55 To: Leise Borg; Freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] White matter and white matter lesions Those are the only WM labels present in the

[Freesurfer] White matter segmentation

2014-10-02 Thread Leise Borg
Hi FreeSurfer I need the white matter segmentations, and I've looked at some e-mail correspondence and one answer I think I can use is the following: If you just want white matter, then better to create a mask from the aparc+aseg.mgz with mri_binarize with the --wm flag. doug I just don't underst

[Freesurfer] White matter and white matter lesions

2014-10-01 Thread Leise Borg
Hi FreeSurfer I am working on a project concerning Alzheimer's patients and I need to know the positions of white matter (WM) and white matter lesions (WML) from your segmentations. To find the WML, I use label 77 in the aparc.a2009s+aseg.mgz-files. To find the WM, I use labels 2 and 41 in the