ut it could
be doing something behind the scenes. Can you verify that you can create a
symlink from a program on the cluster? I've cc'ed Rob D who can help debug this
problem if it persists.
doug
On 9/17/19 1:57 PM, Lauricella, Michael wrote:
> External Email - Use Cautio
f Of Bruce Fischl
Sent: Tuesday, September 17, 2019 10:53 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] mris_sphere question
hmmm, if you rerun does it complete?
On Tue, 17 Sep 2019, Lauricella,
Michael wrote:
>External Email - Use Caution
>
> Hi Bruce,
>
> No error m
: Tuesday, September 17, 2019 10:50 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Recon-all on a cluster error
Does it run properly off the cluster for this data set?
On 9/17/19 1:45 PM, Lauricella, Michael wrote:
>
> External Email - Use Caution
>
> Dear Freesu
External Email - Use Caution
Dear Freesurfer Experts,
I have a an error when running recon-all on a computing cluster. I've checked
the environment and so have some of my more knowledgeable colleagues but we
can't see anything wrong with the environment. I was wondering if anyon
he last message that mris_sphere prints so I believe it has
finished. Does it exit with an error message or just keep running forever?
Bruce
On Tue, 17 Sep 2019, Lauricella, Michael wrote:
>
> External Email - Use Caution
>
> Dear Freesurfer Experts,
>
>
>
> I
External Email - Use Caution
Dear Freesurfer Experts,
I'm fairly new to freesurfer, but have a set-up in which I have been able to
run many successful recon-all runs. One problem that I have sometimes, maybe
about 20% of the time, is that the run will freeze and crash at this st
