Re: [Freesurfer] Problem writing talairach.m3z in mri_ca_register

2011-09-23 Thread Lauge Emil Borch Laurs S0rensen
Hi Martin, Thanks for the cope-snippet. A small C program based on that revealed that it is a problem with popen (gzip is installed and working properly, and exchanging gzip with other programs produced the same error). Error code 38 (ENOSYS) means "Function not implemented". So the problem

Re: [Freesurfer] Problem writing talairach.m3z in mri_ca_register

2011-09-22 Thread Lauge Emil Borch Laurs S0rensen
On Tue, Sep 20, 2011 at 15:00, Bruce Fischl wrote: > what other information would you like? Can you remind me: are you running > on a cluster? Does this happen if you run on your local workstation? Do you > have limits on # of open files? Yes, I am running on a cluster with Gentoo (Linux images

Re: [Freesurfer] Problem writing talairach.m3z in mri_ca_register

2011-09-20 Thread Lauge Emil Borch Laurs S0rensen
On Mon, Sep 19, 2011 at 15:20, R Edgar wrote: > Are you sure that there aren't per process limits which are set lower > than those? > > Richard I just checked, and no, there is no per process memory limit. Is there any way to get more information out from mri_ca_register than what is written i

Re: [Freesurfer] Problem writing talairach.m3z in mri_ca_register

2011-09-19 Thread Lauge Emil Borch Laurs S0rensen
. Best, Lauge On Sun, Sep 18, 2011 at 04:52, Bruce Fischl wrote: Hi Lauge How much ram do yo have? Gzip need a lot Bruce On Sep 17, 2011, at 3:30 PM, Lauge Emil Borch Laurs S0rensen wrote: Lauge The information in this e-mail is intended only for the person to whom it is addressed. If

[Freesurfer] Problem writing talairach.m3z in mri_ca_register

2011-09-17 Thread Lauge Emil Borch Laurs S0rensen
Hi, I am running FreeSurfer on ADNI data and get an error when mri_ca_register attempts to write to transforms/talairach.m3z using gzip. I run the full FreeSurfer pipeline using a bash script containing the following: #!/bin/bash export FREESURFER_HOME=/usr/local/freesurfer source $FREESURFER_