[Freesurfer] recon_checker error

2016-02-01 Thread LIEWALD David
Opensuse 11.4 : Freesurfer 5.3 :QAtools_v1.1 I am trying to generate QC data from data generated using Freesurfer ver 5.3 and I'm getting the following error " Checking if all files exist...PASSED Checking actual file order...FAILED (read ../1006454_20216_2_0/scripts/recon_checker

[Freesurfer] file error

2015-12-09 Thread LIEWALD David
OS Opensuse 13.2 Freesurfer 6 Dev Logfile Attached I have had no luck trying to get freesurfer to run. It is failing at the same point each time ( Please see log). I have tried with multiple datasets in multiple locations both on the local machine and across the network. I have also verified

Re: [Freesurfer] Path Problem

2015-12-04 Thread LIEWALD David
4 Dec 2015, LIEWALD David wrote: > Hi Bruce > > Yes the dir is writable and the echo command does create the test.dat in the > subdir. > > I have attached a recon-all log as requested > > Many Thanks > > Dave > > From:

Re: [Freesurfer] Path Problem

2015-12-04 Thread LIEWALD David
On Fri, 4 Dec 2015, LIEWALD David wrote: > Hi Bruce > > Yes the dir is writable and the echo command does create the test.dat in the > subdir. > > I have attached a recon-all log as requested > > Many Thanks > > Dave > >

Re: [Freesurfer] Path Problem

2015-12-04 Thread LIEWALD David
ers Bruce On Fri, 4 Dec 2015, LIEWALD David wrote: > > Environment : Opensuse 13.2 Freesurver Version 6 (Beta) > > > Hi I hope you can help with this problem > > > I'm using the version 6 Beta due to problems with license authentication. > Freesurfer runs but bail

[Freesurfer] Path Problem

2015-12-04 Thread LIEWALD David
Environment : Opensuse 13.2 Freesurver Version 6 (Beta) Hi I hope you can help with this problem I'm using the version 6 Beta due to problems with license authentication. Freesurfer runs but bails out with a file not found error : Iteration 1 Fri Dec 4 09:38:57 GMT 2015 nu_correct -clobber