[Freesurfer] functional ROI

Hi, If I want to run a functional ROI according to this: http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/MultiModalFmriGroup#GroupROIfMRIAnalysis , is it possible to have the subjects' name in the output file? Is it possible that the volume of an unmasked region (region defined only by anatom

Re: [Freesurfer] FreeSurfer backgrouund color

change the black > background to white: > > $>convert -fill white -opaque black input.tiff output.tiff > > where input.tiff is a black-background tiff, and output.tiff is the same > image but with the background now white. > > > > > Krajcsi Attila wrote: > &g

[Freesurfer] FreeSurfer backgrouund color

Hi, Is there any possibility in tksurfer to change the background color from black to white? Thanks, Attila ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] tcl scripts

this in a shell script and invoke tksurfer once/subject. > > cheers, > Bruce > > > On Tue, 12 May 2009, Krajcsi Attila wrote: > > Hi All, >> >> In tksurfer is it possible to change the subject or the hemisphere from >> the >> tcl script we use? I couldn

[Freesurfer] tcl scripts

Hi All, In tksurfer is it possible to change the subject or the hemisphere from the tcl script we use? I couldn't find the solution for this on the tksurfer scripting wiki page. Maybe it's not possible. And is it possible to send parameters from the tksurfer command to the tcl script? Thank you

Re: [Freesurfer] tkmedit multiple orientation view

Sorry, I put the -tcl parameter in the wrong place in my script after a tksurfer command. Now it works perfectly! Thanks again, Attila On Mon, May 11, 2009 at 8:50 AM, Bruce Fischl wrote: > what was your cmdline? > > On Mon, 11 May 2009, Krajcsi Attila wrote: > > Thank you,

Re: [Freesurfer] tkmedit multiple orientation view

Thank you, Bruce! I tried it, but I get the error message: invalid command name "SetViewPreset" I couldn't find this or similar command in the wiki page: http://surfer.nmr.mgh.harvard.edu/fswiki/TkMeditGuide/TkMeditReference/TkMeditScripting I use FS 4.3. Any idea what could go wrong? Thanks agai

[Freesurfer] tkmedit multiple orientation view

Hi All, Is it possible to start tkmedit with the multiple orientation view as default? Thank you, Attila ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer