Re: [Freesurfer] znzTAGskip error using mri_em_register

2012-10-25 Thread Kim, Daniel
to it? Thanks very much! Danny Kim Children's Brain Mapping Centre BC Children's Hospital From: Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Wednesday, October 24, 2012 4:21 PM To: Kim, Daniel Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesur

[Freesurfer] znzTAGskip error using mri_em_register

2012-10-24 Thread Kim, Daniel
Hello FreeSurfer users, I was finally able to compile mri_em_register successfully from source and trying to test the build with subject 'bert', I ran into this error ~/freesurfer/bin# ./mri_em_register -uns 3 -mask $SUBJECTS_DIR/bert/mri/brainmask.mgz $SUBJECTS_DIR/bert/mri/nu.mgz $FREESURFER

[Freesurfer] Configuring freesurfer developer's environment on Ubuntu

2012-10-03 Thread Kim, Daniel
Hello freesurfer users! I've got a brand new PC with Ubuntu 12.04 64-bit running and following the freesurfer developer's guide to set up a developer environment, I'm getting numerous "undeclared function / undefined type" errors during make. Seeing that the undeclared functions or variable type