t; >
> >> > You can also use bbregister instead of flirt for the intra-subject
> >> > registration - it has the option to initialize with flirt or with SPM.
> >> >
> >> > Hope this helps,
> >> > a.y
> >> >
> >> > O
around with the parameters.
> >
> > You can also use bbregister instead of flirt for the intra-subject
> > registration - it has the option to initialize with flirt or with SPM.
> >
> > Hope this helps,
> > a.y
> >
> > On Wed, 16 May 2012, Kiely Donne
Hi Priti - Thanks for your help. The inter-subject registration seems to
have run OK, but there must be something wrong with the intra-subject
registration. When I try to view it using freeview, it's completely dark -
I don't see a brain at all. Is there a way to troubleshoot this?
Thanks,
Kiely
,
> >
> > Kiely
> >
> >
> > On Fri, Dec 23, 2011 at 2:42 PM, Anastasia Yendiki <
> > ayend...@nmr.mgh.harvard.edu> wrote:
> >
> >> Hi Kiely - It's strange that bepostx would create ph2samples and not
> ph1samples. These are the orientation angles
t bepostx would create ph2samples and not
> ph1samples. These are the orientation angles for the 2 anisotropic
> compartments, so if there's a 2nd there should be a 1st. Have you asked
> about it on the FSL list?
>
> a.y
>
>
> On Thu, 22 Dec 2011, Kiely Donnelly wrote:
>
>
Hi Everyone --
I've been having difficulty getting Tracula to run smoothly on our cluster.
Similar to others on the listserv, the bedpost step was not creating the
necessary files causing an error during the -path step. Based on previous
posts, I ran bedpostx on the dmri directory. This initially
