+
From: "Kang, Jee Won"
Subject: Re: [Freesurfer] Infant Freesurfer - manual edits
To: "freesurfer@nmr.mgh.harvard.edu"
Message-ID:
Content-Type: text/plain; charset="iso-8859-1"
External Email - Use Caution
Dear Freesurfer ex
External Email - Use Caution
Dear Freesurfer experts,
Hello, I have started experimenting with Infant Freesurfer (version 4a14499),
and we have run into a problem with very poor segmentation of the thalamus in
one of our subjects.
Is there a way to incorporate manual edits, a
al aseg (aseg.presurf.mgz) has these areas labeled as nothing (0); they
show up as WM in aseg.mgz and aparc+aseg.mgz. Obviously, it would be good to
have them properly labeled, but is this critical to your applications? Eg, are
you looking at ventricular volume?
On 12/21/2021 9:19 AM, Kang, Jee Won
/plain; charset="us-ascii"
External Email - Use Caution
Hi Jee Won
Can you send us the recon-all.log file? And ideally an example orig.mgz that we
can try things on
Cheers
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Kang, Jee Won
Sent: Tuesday, Dec
be used?
Thank you,
Jee Won
On 10/29/2021 10:46 AM, Kang, Jee Won wrote:
>
> External Email - Use Caution
>
> Hello all,
>
>
> There are two topics I would appreciate your expert advice on:
>
>
> Topic 1: Aseg and wm e
External Email - Use Caution
Hello all,
I'm very new to Freesurfer and have started with quality-checking recons. I
wanted to know if there is a way to compare volumes before and after edits were
made before recon-all has been re-run.
For example, if we have brainmask.mgz tha
