Dear FreeSurfer Developers,
I am attempting to run recon-all on 7T MP2RAGE images (resolution
0.7x0.7x0.7mm³) with hippocampus subfield segmentation. I use the freesurfer
version 5.3 so that I expect an automatic down-sampling to 1x1x1mm³.
I used the data directly from the scanner (without reor
3 14:17
An: Köbe, Theresa
Cc: freesurfer@nmr.mgh.harvard.edu
Betreff: Re: [Freesurfer] Hippocampus ROI overlay on orig-image
Hi Theresa
you can use mri_mc or mri_tesselate on the aseg.mgz with the hippocampal labels
(17 and 53)
cheers
Bruce
On Mon, 25 Nov 2013, "K?be, Theresa" wrote:
Hi guys,
I did the total brain segmentation by freesurfer. Now I want to overlay in
freeview only the hippocampal ROI on the orig-image. Unfortunately, in the
surf-folder is no hippocampus surface. How can I create such a file or are
there any other opportunities to see only the segmented hippo
