[Freesurfer] FreeSurfer Visualization Questions

2021-09-03 Thread Junyeon Won
External Email - Use Caution Dear Freesurfer experts, Could I have a couple of questions regarding visualization? 1) I found significant clusters on the right hemisphere volume after glm_fit and cluster correction. I would like to extract the volume from this cluster for each par

Re: [Freesurfer] fs_install permission denied

2021-09-02 Thread Junyeon Won
4TsdDiL60xv2-YJizx8bvDZg2K-FQWqz62S2rLoVsy2Nur66yQe4/https%3A%2F%2Fraw.githubusercontent.com%2Ffreesurfer%2Ffreesurfer%2Fdev%2Fscripts%2Ffs_install_mcr > -o fs_install_mcr && sudo chmod +x fs_install_mcr > > > > *From: *freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.

[Freesurfer] fs_install permission denied

2021-08-30 Thread Junyeon Won
External Email - Use Caution Dear Freesurfer experts, I was tiring to install fs_install using the below command. cd $FREESURFER_HOME/bin && curl https://secure-web.cisco.com/186mRL7xDETIpN5cZS-wivuTmyhZn0PmwqT8bMpnWm3D4D_WUHYglUgqCALj1K0RLMMNugABxNcqPDrvA0L2GjDjTujRrsnTCSBefUDtO

Re: [Freesurfer] FreeSurfer qcache Inquiry

2021-08-28 Thread Junyeon Won
asures with the -measure option. Eg, -measure thickness > (you can add more -measure options for more measures) > > > On 8/13/2021 5:10 PM, Junyeon Won wrote: > > External Email - Use Caution > Dear FreeSurfer experts, > > I am trying to administer group-level an

[Freesurfer] FreeSurfer qcache Inquiry

2021-08-13 Thread Junyeon Won
External Email - Use Caution Dear FreeSurfer experts, I am trying to administer group-level analyses using the Human Connectome Project dataset. I downloaded extended processed structural data from the HCP webpage and processed FreeSurfer data were available there. So I ran qcache