[Freesurfer] Probabilistic atlas illustration

Dear all In the paper "A computational atlas of the hippocampal formation using *ex vivo*, ultra-high resolution MRI" (DOI:10.1016/j.neuroimage.2015.04.042 ;2015) y

[Freesurfer] modifying wm.mgz after editing aseg

Dear all my question would be whether editing wm.mgz and running autorecon2-wm will affect a previous edit of aseg? Further can aseg and wm.mgz be processed simultaneously as it is possible for wm.mgz and pial surface using autorecon2-wm? Greetings Julian ___

[Freesurfer] freeview, tkmedit won't start

Dear all I installed freesurfer as supposed for linux (ubuntu). When I tried to run freeview an error for tcsh occured. Apparenty I fixed that one but still freeview doesn't start. Typing the command: "freeview" nothing happens (I did export and source freesurfer correctly). Further trying to run

Re: [Freesurfer] recon-all issues

; can you give us more details about what exactly is missing? > > cheers > Bruce > > On Mon, 7 Mar 2016, Julian Jäckle wrote: > > >> Dear FS-team >> >> >> For purposes of measuring cortical thickness I’ve been running recon-all >> as described on

[Freesurfer] recon-all issues

Dear FS-team For purposes of measuring cortical thickness I’ve been running recon-all as described on your RecommendedReconstruction site. However I am missing some files including e.g the skullstripped file. Could you check my log file for the root cause? Greetings Julian recon-all.log Des